Examples¶
These examples cover some basic topics in writing Brian scripts in Python. The complete source code for the examples is available in the examples folder in the extras package.
electrophysiology¶
- Example: voltageclamp (electrophysiology)
- Example: compensation_ex3_quality (electrophysiology)
- Example: compensation_ex2_spikes (electrophysiology)
- Example: threshold_analysis (electrophysiology)
- Example: AEC (electrophysiology)
- Example: SEVC (electrophysiology)
- Example: bridge (electrophysiology)
- Example: DCC (electrophysiology)
- Example: compensation_ex1 (electrophysiology)
misc¶
- Example: cable (misc)
- Example: stopping (misc)
- Example: topographic_map2 (misc)
- Example: transient_sync (misc)
- Example: pulsepacket (misc)
- Example: mirollo_strogatz (misc)
- Example: CUBA (misc)
- Example: current_clamp (misc)
- Example: phase_locking (misc)
- Example: correlated_inputs2 (misc)
- Example: rate_model (misc)
- Example: timed_array (misc)
- Example: noisy_ring (misc)
- Example: delays (misc)
- Example: after_potential (misc)
- Example: named_threshold (misc)
- Example: ring (misc)
- Example: I-F_curve2 (misc)
- Example: adaptive_threshold (misc)
- Example: spike_triggered_average (misc)
- Example: leaky_if (misc)
- Example: I-F_curve (misc)
- Example: heterogeneous_delays (misc)
- Example: spikes_io (misc)
- Example: COBAHH (misc)
- Example: poissongroup (misc)
- Example: two_neurons (misc)
- Example: multipleclocks (misc)
- Example: HodgkinHuxley (misc)
- Example: stim2d (misc)
- Example: reliability (misc)
- Example: minimalexample (misc)
- Example: using_classes (misc)
- Example: poisson (misc)
- Example: adaptive (misc)
- Example: van_rossum_metric (misc)
- Example: realtime_plotting (misc)
- Example: topographic_map (misc)
- Example: if (misc)
- Example: remotecontrolclient (misc)
- Example: linked_var (misc)
- Example: gap_junctions (misc)
- Example: remotecontrolserver (misc)
- Example: non_reliability (misc)
- Example: correlated_inputs (misc)
- Example: expIF_network (misc)
- Example: COBA (misc)
synapses¶
- Example: licklider (synapses)
- Example: two_synapses (synapses)
- Example: transient_sync (synapses)
- Example: synapse_construction (synapses)
- Example: CUBA (synapses)
- Example: poisson_synapses (synapses)
- Example: noisy_ring (synapses)
- Example: barrelcortex (synapses)
- Example: short_term_plasticity2 (synapses)
- Example: one_synapse (synapses)
- Example: one_synapse_bis (synapses)
- Example: STDP1_bis (synapses)
- Example: delayed_stdp (synapses)
- Example: nonlinear_synapses (synapses)
- Example: STDP1 (synapses)
- Example: short_term_plasticity (synapses)
- Example: gapjunctions (synapses)
- Example: jeffress (synapses)
- Example: probabilistic_synapses2 (synapses)
- Example: Diesmann_et_al_1999 (synapses)
- Example: multiple_delays (synapses)
- Example: probabilistic_synapses (synapses)
- Example: weightmonitor (synapses)
plasticity¶
interface¶
twister¶
multiprocessing¶
hears¶
- Example: online_computation (hears)
- Example: sound_localisation_model (hears)
- Example: dcgc (hears)
- Example: butterworth (hears)
- Example: time_varying_filter2 (hears)
- Example: log_gammachirp (hears)
- Example: drnl (hears)
- Example: simple_anf (hears)
- Example: time_varying_filter1 (hears)
- Example: gammatone (hears)
- Example: cochlear_models (hears)
- Example: approximate_gammatone (hears)
- Example: artificial_vowels (hears)
- Example: linear_gammachirp (hears)
- Example: IIRfilterbank (hears)
- Example: ircam_hrtf (hears)
- Example: cochleagram (hears)
- Example: sounds (hears)
hears/tan_carney_2003¶
modelfitting¶
frompapers¶
- Example: Touboul_Brette_2008 (frompapers)
- Example: Platkiewicz_Brette_2011 (frompapers)
- Example: Brette_2004 (frompapers)
- Example: Plakiewicz_Brette_2010 (frompapers)
- Example: Guetig_Sompolinsky_2009 (frompapers)
- Example: Diesmann_et_al_1999_longer (frompapers)
- Example: Kremer_et_al_2011 (frompapers)
- Example: Rossant_et_al_2011bis (frompapers)
- Distributed synchrony example
- Example: Rossant_et_al_2011 (frompapers)
- Coincidence detection example
- Example: Brunel_Hakim_1999 (frompapers)
- Example: Vogels_et_al_2011 (frompapers)
- Example: Rothman_Manis_2003 (frompapers)
- Example: Brette_Guigon_2003 (frompapers)
- Example: Sturzl_et_al_2000 (frompapers)
- Example: Wang_Buszaki_1996 (frompapers)
- Example: Goodman_Brette_2010 (frompapers)
- Example: Muller_et_al_2011 (frompapers)
- Example: Diesmann_et_al_1999 (frompapers)
- Example: Brette_Gerstner_2005 (frompapers)
frompapers/computing with neural synchrony/coincidence detection and synchrony¶
- Example: Fig6_shared_variability (frompapers/computing with neural synchrony/coincidence detection and synchrony)
- Example: Fig1F_ROC (frompapers/computing with neural synchrony/coincidence detection and synchrony)
- Example: Fig5D_reproducibility (frompapers/computing with neural synchrony/coincidence detection and synchrony)
- Example: Fig5E_precision_reliability (frompapers/computing with neural synchrony/coincidence detection and synchrony)
- Example: Fig1C (frompapers/computing with neural synchrony/coincidence detection and synchrony)
frompapers/computing with neural synchrony/hearing¶
frompapers/computing with neural synchrony/duration selectivity¶
- Example: params (frompapers/computing with neural synchrony/duration selectivity)
- Example: Fig2C_decoding_synchrony (frompapers/computing with neural synchrony/duration selectivity)
- Example: Fig1A_rebound_neurons (frompapers/computing with neural synchrony/duration selectivity)
- Example: Fig4_duration_stdp (frompapers/computing with neural synchrony/duration selectivity)
- Example: Fig1D_duration_selectivity (frompapers/computing with neural synchrony/duration selectivity)
- Example: Fig2A_synchrony_partition (frompapers/computing with neural synchrony/duration selectivity)
frompapers/computing with neural synchrony/olfaction¶
- Example: params (frompapers/computing with neural synchrony/olfaction)
- Example: Fig11B_olfaction_stdp_learning (frompapers/computing with neural synchrony/olfaction)
- Example: Fig9B_olfaction (frompapers/computing with neural synchrony/olfaction)
- Example: Fig11B_olfaction_stdp_testing (frompapers/computing with neural synchrony/olfaction)